Daugherty, M.D.* and S.E. Zanders*. (2019). Gene conversion generates evolutionary novelty that fuels genetic conflicts. Current Opinion in Genetics & Development. 58-59, 49-54. [Journal link]
          * co-corresponding author

Moens, U., Calvignac-Spencer, S., Lauber, C., Ramqvist, T., Feltkamp, M.C., Daugherty, M.D., Verschoor, E.J., and B. Ehlers. (2017). ICTV Virus Taxonomy Profile: Polyomaviridae. J General Virology. 98, 1159-1160. [Pubmed]

Chavarria-Smith, J., Mitchell, P.S., Ho, A.M., Daugherty, M.D.* and R.E. Vance*. (2016). Functional and evolutionary analyses identify proteolysis as a general mechanism for NLRP1 inflammasome activation. PLoS Pathogens. 12, e1006052.  [PLoS Pathogens] 
          * co-corresponding author

Calvignac-Spencer, S., Feltkamp, M.C., Daugherty, M.D., Moens, U., Ramqvist, T., Johne, R., and B. Ehlers. (2016). A taxonomy update for the family Polyomaviridae. Archives of Virology. 161, 1739-50. [Pubmed] 


Daugherty, M.D., Schaller, A.M., Geballe, A.P. and H.S. Malik. (2016). Evolution-guided functional analyses reveal diverse antiviral specificities encoded by IFIT1 genes in mammals. eLife. 5, e14228.  [Pubmed]
          Insight in eLife by Henzy and Johnson. (2016). 5, e17224. [Pubmed]

Chou, S.*, Daugherty, M.D.*, Peterson, S.B., Biboy, J., Yang, Y., Jutras, B.L., Fritz-Laylin, L.K., Ferrin, M.A., Harding, B.N., Jacobs-Wagner, C., Yang, X.F., Vollmer, W., Malik, H.S. and J.D. Mougous. (2015). Transferred interbacterial antagonism genes augment eukaryotic innate immune function. Nature. 518, 98-101.  [Pubmed] 
          * equal contribution
          Highlighted by Ed Yong - National Geographic - November 25, 2014
          Covered by the Washington Post - November 26, 2014
          Highlighted in Cell Host & Microbe - December 8, 2014
          Highlighted in Nature Reviews Microbiology - January 14, 2015
          Discussed on This Week in Microbiology (TWiM), episode 98 - February 18, 2015

Daugherty, M.D. and H.S. Malik. (2014).  How a Virus Blocks a Cellular Emergency Access Lane to the Nucleus, STAT!  Cell Host & Microbe.  16, 150-2. [Pubmed]
          Preview for: Xu, W., et al., (2014). Cell Host & Microbe. 16, 187-200. 

Daugherty, M.D., Young, J.M., Kerns, J.A., and H.S. Malik. (2014). Rapid evolution of PARP genes suggests a broad role for ADP-ribosylation in host-virus conflicts. PLoS Genet. 10, e1004403. [Pubmed]

Tenthorey, J.L., Kofoed, E.M., Daugherty, M.D., Malik, H.S., and R.E. Vance. (2014). Molecular basis for specific recognition of bacterial ligands by NAIP/NLRC4 inflammasomes. Mol Cell. 54, 17-29. [Pubmed]

Carter, J.J.*, Daugherty, M.D.*, Qi, X., Bheda-Malge, A., Wipf, G.C., Robinson, K., Roman, A., Malik, H.S. and D.A. Galloway. (2013).  Identification of an overprinting gene in Merkel cell polyomavirus provides evolutionary insight into the birth of viral genes. Proc Natl Acad Sci U S A 110, 12744-9.  [Pubmed]
          * equal contribution

Daugherty, M.D. and H.S. Malik. (2012). Rules of engagement: molecular insights from host-virus arms races. Ann. Rev. Genet. 46, 677-700.  [Pubmed]
          Faculty of 1000 recommended


Daugherty, M.D., Liu, B, and A.D. Frankel. (2010). Structural basis for cooperative RNA binding and export complex assembly by HIV Rev. Nat Struct Mol Biol 17, 1337-42.  [Pubmed]
          Faculty of 1000 recommended

Daugherty, M.D., Booth, D.S., Jayaraman, B, Cheng, Y., and A.D. Frankel. (2010). HIV RRE directs assembly of the Rev homo-oligomer into discrete, asymmetric complexes. Proc Natl Acad Sci U S A 107, 12481-6.  [Pubmed]

Daugherty, M.D., D’Orso, I., and A.D. Frankel (2008). A solution to limited genomic capacity: Using adaptable binding surfaces to assemble the functional HIV Rev oligomer on RNA. Mol Cell 31, 824-834.  [Pubmed]

Link to all Pubmed articles